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Yes this could be a hardware issue and memory comes to mind. However if you installed several things at once and ignored the reboot each time this could have gone amiss.
You had the drives connected wrong as you stated in your post. But before going too far with hardware I would start over with the Windows installation with only one drive connected. Install windows and the hardware drivers for your system and see if things are stable.
If you have issues with installation and have 2 sticks of ram remove one stick to see if your Ram is at issue. The specs of your system including PSU make and wattage would be helpfull.
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